0% (v/v) hemin (Remel, Lenexa, KS) and 0.1% (v/v) vitamin K1 (Remel, Lenexa, KS). Both bacteria were cultured under anaerobic conditions using Gas-Pak (BD, Sparks, MD) at 37 °C for 3 days without shaking. Various dilutions of F. nucleatum [4 × 108 to 4 × 102 colony forming unit (CFU)/0.2 ml] and P. gingivalis [(108–102 CFU)/0.1 ml] www.selleckchem.com/products/bmn-673.html were incubated in a 96-well nonpyrogenic polystyrene plate ( Supplementary Fig. 1)

at 37 °C for 36 h under anaerobic conditions. Each well on the plate was gently washed with phosphate-buffered saline (PBS) (pH 7.2) and stained with 0.4% (w/v) crystal violet for 1 min. Bacterial co-aggregation recognized as the association of bacterial particles was detected by a Malvern Zetasizer Nano-ZS (Malvern,

Worcestershire, UK) which measures the size of bacterial Nutlin-3 nmr particles in a fluid by detecting the Brownian motion of the particles. The sizes of the particles are measured by observing the scattering of laser light from these particles using the Stokes–Einstein relationship [23]. This method is called dynamic light scattering (DLS). To obtain a pattern of kinetic co-aggregation, F. nucleatum (4 × 109 CFU in 2 ml TSB medium) alone, P. gingivalis (105 CFU in 1 ml TSB medium) alone, or F. nucleatum (4 × 109 CFU in 2 ml TSB medium) plus P. gingivalis (105 CFU in 1 ml TSB medium) were incubated for 1, 3, 6, and 36 h. After that, bacteria were diluted (100-fold) in 400 μl TSB medium. Forty microliters of each diluted solution was added into a micro Plastibrand ultraviolet (UV)-cuvette (Brand GMBH, Wertheim, Germany). The size (nm) of co-aggregated heptaminol bacteria was measured at room temperature by a Malvern Zetasizer Nano-ZS equipped with a 4 mW He–Ne laser (633 nm). Data analysis was performed by Malvern’s Dispersion Technology

Software (DTS), using a non-negatively constrained least squares fitting algorithm. A polymerase chain reaction (PCR) product encoding a putative F. nucleatum FomA (GenBank Accession Number: X72583), an outer membrane protein, was generated using the forward PCR primer (5′-AAAAATTGTCGACGAAACAACCATGAAAAAATTAGCATTAGTATTA-3′) containing a Sal I site (GTCGAC) and the reverse PCR primer (5′-CTGTGAAAGCTTTTAATAATTTTTATCAATTTTAACCTTAGCTAAGC-3′) containing a Hind III site (AAGCTT). The amplified fragment was inserted into an In-Fusion™ Ready pEcoli-6×HN-GFPuv vector (Clontech Laboratories, Inc., Mountain View, CA) which was subsequently transformed into an E. coli BL21(DE3) strain (Stratagene, La Jolla, CA). Luria-Bertani (LB) plates containing ampicillin (50 μg/ml) were used for colony selection. A single colony was isolated and cultured overnight at 37 °C with gentle shaking. An aliquot of the overnight culture was diluted 1:100 with LB-medium and incubated at 37 °C until reaching optical density at 600 nm of 0.6. Isopropyl-β-d-thiogalactoside (IPTG) (1 mM) was added into culture for 4 h.