All chemicals used in this study

All chemicals used in this study Epigenetics inhibitor were purchased from Sigma Chemical Co. (St Louis, MO, USA) unless otherwise specified. Primary

antibodies specific to p-ERK (sc-7383), p-JNK1/2 (sc-6254), NF-κB subfamilies (p50, sc-8414; p52, sc-7386; p65, sc-8008; RelB, sc-226, c-Rel, sc-6955) and Skp2 (sc-7164) were purchased from Santa Cruz Biotechnology (Santa Cruz, CA, USA). Primary antibodies specific to p-p38 MAP kinase (#9215, Cell Signaling Technology, Danvers, MA, USA), I-Ad MHC class II molecule (553611, BD Bioscience, Franklin Lakes, NJ, USA), p27kip (14-6716-81, eBioscience, San Diego, CA, USA), IL-16 (MAB1727, R&D systems, Minneapolis, MN, USA) and tubulin (T3526, Sigma Chemical Co.) were purchased from the indicated suppliers. NE-PER nuclear and cytoplasmic extraction reagents (Pierce Biotechnology, Rockford, buy AZD6244 IL, USA) were used to separate and prepare cytoplasmic and nuclear extracts from the cells. Anti-I-Ad antibody was purified from serum-free culture supernatant obtained from the MK-D6 hybridoma cell line [20]. The resting B cell line, 38B9, established from BALB/c mice (d-haplotype), was cultured in RPMI-1640 medium supplemented with 5% fetal bovine serum (FBS, PAA, Etobicoke, Ontario, Canada) and 50 μm 2-mercaptoethanol at 37 °C in a humidified 5% CO2 incubator. Cells (1.5 × 107 38B9) were washed with cold PBS, lysed in lysis buffer [1% Triton X-100 in 50 mm Tris–HCl pH 7.4, 150 mm NaCl,

1 mm Na3VO4, 5 mm NaF and protease inhibitor cocktail (Complete, STK38 Mini; Roche Applied Science, Mannheim, Germany)] for 30 min

at 4 °C, and subsequently centrifuged for 10 min at 13 000× g. Protein concentration was determined using a commercial Bradford assay system with bovine serum albumin (BSA) as a standard. After treatment with 5× Laemmli reducing sample buffer, the lysates were resolved by 12% SDS-PAGE and transferred electronically to polyvinylidene difluoride (PVDF) membranes. The membranes were blocked with 5% BSA/TBST and incubated first with specific antibodies and then with a horseradish peroxidase-conjugated secondary antibody. Finally, the blots were developed using the ECL detection system (Pierce Biotechnology). Cell lysates were precleared by incubating them with a slurry of protein A-sepharose 4B (GE Healthcare Bio-Science, Piscataway, NJ, USA) with rotation for 30 min at 4 °C. The samples were then centrifuged at 5000 g for 3 min, and the pellets were discarded. The collected supernatants were mixed and rotated with MK-D6 anti-I-Ad antibody for 4 h at 4 °C. A slurry of protein A-sepharose 4B was added, and the mixture was incubated overnight at 4 °C. The beads were then washed five times with lysis buffer before they were resuspended in sample reducing buffer. 38B9 resting B cells (5 × 106) that were untreated or treated with LPS (50 μg/ml) or LPS together with MK-D6 anti-I-Ad antibody (50 μg/ml) were lysed in lysis buffer.

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